Man pages for brendaDb
The BRENDA Enzyme Database

acronymsInformation fields and their corresponding acronyms.
BiocycPathwayEnzymesGet all EC numbers involved in a BioCyc pathway.
BiocycPathwayGenesGet all genes involved in a BioCyc pathway.
brendaDb-packagebrendaDb: the BRENDA enzyme database.
CleanECNumberRemove deleted and transferred EC numbers.
ConfigBPCoresConfigure the number of cores used by BiocParallel.
DownloadBrendaDownload and unzip the BRENDA text file.
ExtractFieldExtract a specific field from a brenda.entries object.
ID2EnzymeA helper function for converting names/synonyms to EC...
InitBrendaDeprecatedEntryCreate a 'brenda.deprecated.entry' object.
InitBrendaEntryCreate a 'brenda.entry' object.
ParseGenericGeneric parser for a description string.
ParseNoDescriptionGeneric parser for a description string without extracted...
ParseProteinParse a "PROTEIN" entry.
ParseProteinNumParse protein information strings or reference strings.
ParseReactionParser for the description strings of certain...
ParseRecommendedNameParse a "RECOMMENDED_NAME" entry into a string.
ParseReferenceParse a "REFERENCE" entry.
ParseSystematicNameParse a "SYSTEMATIC_NAME" entry into a string.
PrettyPrintBrendaEntryPrint a brenda.entry in a tree view.
print.brenda.entriesShow the number of regular and transferred/deleted...
print.brenda.entryShow the non-empty fields in the query result.
PrintTreeHelperPrint the tree structure with correct whitespace.
QueryBrendaQuery for multiple enzymes.
QueryBrendaBaseQuery for a specific enzyme.
ReadBrendaRead BRENDA text file into matrix.
ReadBrendaFileRead raw BRENDA text file.
SelectOrganismSelect a subset of organisms in the brenda.query object.
SeparateEntriesConvert vector of lines to matrix.
SeparateSubentriesPreprocessing of entry description.
ShowFieldsShow all unique BRENDA fields and their corresponding...
brendaDb documentation built on Nov. 8, 2020, 5:16 p.m.