huge_example: huge example
In ceRNAnetsim: Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)
Description
A sample dataset which is utilised through integration of TCGA_E9_A1N5_normal,
TCGA_E9_A1N5_mirnanormal and high-throughput experimental miRNA:gene dataset.
Format
A data frame with 7 variables and 26176 observation:
- competing
name of gene
- miRNA
name of miRNA
- competing_counts
Expression values of competing element (gene)
- mirnaexpression_normal
Expression value of miRNA elements in normal tissue
- Energy
Energy of miRNA:target binding
- region_effect
Coefficient for efficiency of location on target
- seed_type_effect
Coefficient for efficiency of seed sequence of miRNA:target interaction
Source
Dataset was integrated by us.
ceRNAnetsim documentation built on Nov. 28, 2020, 2 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
A sample dataset which is utilised through integration of TCGA_E9_A1N5_normal, TCGA_E9_A1N5_mirnanormal and high-throughput experimental miRNA:gene dataset.
Format
A data frame with 7 variables and 26176 observation:
- competing
name of gene
- miRNA
name of miRNA
- competing_counts
Expression values of competing element (gene)
- mirnaexpression_normal
Expression value of miRNA elements in normal tissue
- Energy
Energy of miRNA:target binding
- region_effect
Coefficient for efficiency of location on target
- seed_type_effect
Coefficient for efficiency of seed sequence of miRNA:target interaction
Source
Dataset was integrated by us.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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