celaref: Single-cell RNAseq cell cluster labelling by reference

After the clustering step of a single-cell RNAseq experiment, this package aims to suggest labels/cell types for the clusters, on the basis of similarity to a reference dataset. It requires a table of read counts per cell per gene, and a list of the cells belonging to each of the clusters, (for both test and reference data).

Getting started

Package details

AuthorSarah Williams [aut, cre]
Bioconductor views SingleCell
MaintainerSarah Williams <sarah.williams1@monash.edu>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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celaref documentation built on Nov. 8, 2020, 5:03 p.m.