celaref: Single-cell RNAseq cell cluster labelling by reference

After the clustering step of a single-cell RNAseq experiment, this package aims to suggest labels/cell types for the clusters, on the basis of similarity to a reference dataset. It requires a table of read counts per cell per gene, and a list of the cells belonging to each of the clusters, (for both test and reference data).

Getting started

Package details

AuthorSarah Williams [aut, cre]
Bioconductor views SingleCell
MaintainerSarah Williams <[email protected]>
LicenseGPL-3
Version1.4.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("celaref")

Try the celaref package in your browser

Any scripts or data that you put into this service are public.

celaref documentation built on Oct. 31, 2019, 9:57 a.m.