API for celaref
Single-cell RNAseq cell cluster labelling by reference
| Global functions | |
|---|---|
| contrast_each_group_to_the_rest | Man page Source code |
| contrast_each_group_to_the_rest_for_norm_ma_with_limma | Man page Source code |
| contrast_the_group_to_the_rest | Man page Source code |
| contrast_the_group_to_the_rest_with_limma_for_microarray | Man page Source code |
| convert_se_gene_ids | Man page Source code |
| de_table.demo_query | Man page |
| de_table.demo_ref | Man page |
| demo_cell_info_table | Man page |
| demo_counts_matrix | Man page |
| demo_gene_info_table | Man page |
| demo_microarray_expr | Man page |
| demo_microarray_sample_sheet | Man page |
| demo_query_se | Man page |
| demo_ref_se | Man page |
| find_within_match_differences | Man page Source code |
| get_counts_index | Man page Source code |
| get_inner_or_outer_ci | Man page Source code |
| get_limma_top_table_with_ci | Man page Source code |
| get_matched_stepped_mwtest_res_table | Man page Source code |
| get_ranking_and_test_results | Man page |
| get_rankstat_table | Man page Source code |
| get_reciprocal_matches | Man page Source code |
| get_stepped_pvals_str | Man page Source code |
| get_the_up_genes_for_all_possible_groups | Man page Source code |
| get_the_up_genes_for_group | Man page Source code |
| get_vs_random_pval | Man page Source code |
| load_dataset_10Xdata | Man page Source code |
| load_se_from_files | Man page Source code |
| load_se_from_tables | Man page Source code |
| make_ranking_violin_plot | Man page Source code |
| make_ref_similarity_names | Man page Source code |
| make_ref_similarity_names_for_group | Man page Source code |
| make_ref_similarity_names_using_marked | Man page Source code |
| run_pair_test_stats | Man page Source code |
| subset_cells_by_group | Man page Source code |
| subset_se_cells_for_group_test | Man page Source code |
| trim_small_groups_and_low_expression_genes | Man page Source code |
