Man pages for cellHTS
Analysis of cell-based screens
| annotate | Annotates the gene IDs of a given cellHTS object |
| bdgpbiomart | Dataset with annotation of CG identifiers |
| Bscore | B score normalization |
| configure | Configures the plates and plate result files |
| data-KcViab | A sample cellHTS object - D. melanogaster genome-wide RNAi... |
| data-KcViabSmall | A sample cellHTS object - D. melanogaster genome-wide RNAi... |
| getEnVisionRawData | Read a plate file obtain from EnVision Plate Reader |
| getLibraryPlate | 384-well plate assay format to a 96-well plate library format |
| getMatrix | Create a matrix with replicate data in columns |
| imageScreen | Experiment-wide quality control plot of a cellHTS object |
| normalizeChannels | Normalization of dual-channel data and data transformation |
| normalizePlates | Plate-wise data normalization, and data transformation |
| oneRowPerId | Rearrange dataframe entries such that there is exactly one... |
| plotPlateLibrary | Plate plot of the raw data of the four consecutive 96-well... |
| plotSpatialEffects | Plate plot with the row and column offsets estimated by the B... |
| print.cellHTS | Printing cellHTS objects |
| readPlateData | Read a collection of plate reader data files |
| ROC | Creates an object of class "ROC" which can be plotted as a... |
| screenMatch | Matching the gene annotation of two screens |
| summarizeChannels | Normalization and transformation of dual-channel data |
| summarizeReplicates | Summarizes between normalized replicate values given in a... |
| writeReport | Create a directory with HTML pages of linked tables and plots... |
| writeTab | Write the data from a cellHTS object to a tab-delimited file |
| write.tabdel | Wrapper to function 'write.table' used to write data to a... |
