getEnVisionRawData: Read a plate file obtain from EnVision Plate Reader
In cellHTS: Analysis of cell-based screens

Description Usage Arguments Details Value Author(s) See Also Examples

Import functions to read a plate file obtained from EnVision Plate Reader. These functions should be set as the import function of readPlateData through the argument importFun when reading plate result files obtained from EnVision plate reader.

1 2	getEnVisionRawData(f) getEnVisionCrosstalkCorrectedData(f)

`f`	the name of the result plate file to read.

These functions should not be called directly. Instead, they should be set as the import function of readPlateData through the argument importFun when reading plate result files obtained from an EnVision plate reader.

These functions return a list with two components. The first component should be a 'data.frame' with the following slots: well (a character vector with the well identifier in the plate) and val (the intensity values measured at each well). The second component of this list should be a character vector containing a copy of the imported input data file (such as the output of readLines). It should be suitable to be used as input for writeLines, since it will be used to reproduce the intensity files that are linked in the HTML quality reports generated by writeReport.

Ligia Bras ligia@ebi.ac.uk

readPlateData

    plateFile <- system.file("EnVisionExample/XXX_1500.csv", package = "cellHTS")
    onePlate <- getEnVisionRawData(plateFile)

   ## to get the cross talk corrected data:
   onePlate2 <- getEnVisionCrosstalkCorrectedData(plateFile)