cstest: A test ChIP-Seq dataset

In chipseq: chipseq: A package for analyzing chipseq data

Description

A small subset of a ChIP-Seq dataset downloaded from the Short-Read Archive.

Usage

data(cstest)

Format

The dataset is on object of class GRangesList with read alignments from three chromosomes in two lanes representing CTCF and GFP pull-down in mouse.

Source

Short Read Archive, GEO accession number GSM288351 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM288351

References

Chen X., Xu H., Yuan P., Fang F., Huss M., Vega V.B., Wong E., Orlov Y.L., Zhang W., Jiang J., Loh Y.H., Yeo H.C., Yeo Z.X., Narang V., Govindarajan K.R., Leong B., Shahab A.S., Ruan Y., Bourque G., Sung W.K., Clarke N.D., Wei C.L., Ng H.H. (2008), “Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells”. Cell, 133:1106-1117.

Examples

data(cstest)
names(cstest)
cstest$gfp

chipseq documentation built on Nov. 8, 2020, 5:19 p.m.