| anClique | 'anClique' class constructor |
| anClique-class | 'anClique' S4 class for annotating isotopes and adducts |
| cliqueMS | 'cliqueMS' annotates isotopes and adducts in m/z data |
| computeCliques | Computes clique groups from a similarity network |
| createanClique | 'createanClique' generic function to create an object of... |
| createNetwork | Generic function to create a similarity network from... |
| ex.cliqueGroups | Example m/z processed data |
| getAnnotation | Annotate adducts and fragments |
| getCliques | Compute clique groups from processed m/z data |
| getIsotopes | Annotate isotopes |
| negative.adinfo | Default list of negative charged adducts |
| positive.adinfo | Default list of positive charged adducts |
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