seqdat: Annotation for the Enterococcus sequence data set.

In clstutils: Tools for performing taxonomic assignment.

Description

Provides annotation for link{seqs}, an aligned 16S rRNA sequences representing three Enterococcus species.

Usage

data(seqdat)

Format

A data frame with 200 observations on the following 5 variables.

seqname

a character vector

accession

a character vector containing GenBank accession numbers.

tax_id

a character vector

tax_name

a character vector

isType

a logical vector indicating if the sequence is from a type strain.

Source

These sequences were downloaded from the Ribosomal Database Project website http://rdp.cme.msu.edu/

Examples

data(seqdat)
with(seqdat,{
table(tax_name, isType)
})

clstutils documentation built on Nov. 8, 2020, 5:23 p.m.