cnvGSA: Gene Set Analysis of (Rare) Copy Number Variants

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cnvGSA")
AuthorDaniele Merico <daniele.merico@gmail.com>, Robert Ziman <rziman@gmail.com>; packaged by Joseph Lugo <joseph.r.lugo@gmail.com>
Bioconductor views MultipleComparison
Date of publicationNone
MaintainerJoseph Lugo <joseph.r.lugo@gmail.com>
LicenseLGPL
Version1.18.0

View on Bioconductor

Functions

cnvData.ls Man page
cnvData.ls<- Man page
cnvData.ls<-,CnvGSAInput-method Man page
cnvData.ls,CnvGSAInput-method Man page
cnvGSA Man page
cnvGSAgsTables Man page
cnvGSAIn Man page
CnvGSAInput Man page
CnvGSAInput-class Man page
cnvGSAlogRegTest Man page
CnvGSAOutput Man page
CnvGSAOutput-class Man page
cnvGSA-package Man page
config.df Man page
config.df,CnvGSAOutput-method Man page
config.ls Man page
config.ls<- Man page
config.ls<-,CnvGSAInput-method Man page
config.ls,CnvGSAInput-method Man page
f.enrFiles Man page
f.makeViz Man page
f.readConfig Man page
geneID.ls Man page
geneID.ls<- Man page
geneID.ls<-,CnvGSAInput-method Man page
geneID.ls,CnvGSAInput-method Man page
gsData.ls Man page
gsData.ls<- Man page
gsData.ls<-,CnvGSAInput-method Man page
gsData.ls,CnvGSAInput-method Man page
gsData.ls,CnvGSAOutput-method Man page
gsTables.ls Man page
gsTables.ls,CnvGSAOutput-method Man page
params.ls Man page
params.ls<- Man page
params.ls<-,CnvGSAInput-method Man page
params.ls,CnvGSAInput-method Man page
phData.ls Man page
phData.ls<- Man page
phData.ls<-,CnvGSAInput-method Man page
phData.ls,CnvGSAInput-method Man page
phData.ls,CnvGSAOutput-method Man page
res.ls Man page
res.ls,CnvGSAOutput-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/cnvGSA.R R/cnvGSAviz.R R/enrFiles.R
build
build/vignette.rds
external_data_store.txt
inst
inst/doc
inst/doc/cnvGSA-vignette.Rnw
inst/doc/cnvGSA-vignette.pdf
inst/doc/cnvGSAUsersGuide.pdf
inst/extdata
inst/extdata/configFile.txt
inst/scripts
man
man/CnvGSAInput-class.Rd man/CnvGSAOutput-class.Rd man/cnvGSA-package.Rd man/cnvGSAIn.Rd man/cnvGSAgsTables.Rd man/cnvGSAlogRegTest.Rd man/f.enrFiles.Rd man/f.makeViz.Rd man/f.readConfig.Rd
vignettes
vignettes/cnvGSA-vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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