API for compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
| Global functions | |
|---|---|
| DESeq2.createRmd | Man page Source code |
| DSS.createRmd | Man page Source code |
| EBSeq.createRmd | Man page Source code |
| NBPSeq.createRmd | Man page Source code |
| NOISeq.prenorm.createRmd | Man page Source code |
| TCC.createRmd | Man page Source code |
| baySeq.createRmd | Man page Source code |
| checkClass | Source code Source code |
| checkCompatibility | Source code |
| checkDataObject | Man page Source code |
| checkRange | Source code |
| checkTableConsistency | Man page Source code |
| check_compData | Man page Source code |
| check_compData_results | Man page Source code |
| compData | Man page Source code |
| compData-class | Man page |
| compcodeR | Man page |
| compcodeR-package | Man page |
| computeAval | Source code |
| computeCorrelation | Source code |
| computeFDR | Source code |
| computeFN | Source code |
| computeFP | Source code |
| computeMCC | Source code |
| computeMval | Source code |
| computeOverlap | Source code |
| computeSignal | Source code |
| computeSorensen | Source code |
| computeTN | Source code |
| computeTP | Source code |
| computeTPR | Source code |
| computeTypeIerror | Source code |
| convertListTocompData | Man page Source code |
| convertcompDataToList | Man page Source code |
| createResultTable | Source code |
| createResultsRmdFile | Source code |
| createSelectionPanel | Source code |
| definePlotColors | Source code |
| edgeR.GLM.createRmd | Man page Source code |
| edgeR.exact.createRmd | Man page Source code |
| findFileIdx | Source code |
| findGenesAllZero | Source code |
| generateCodeHTMLs | Man page Source code |
| generateSyntheticData | Man page Source code |
| listcreateRmd | Man page Source code |
| logcpm.limma.createRmd | Man page Source code |
| makeFalseDiscoveryCurves | Source code |
| makeROCcurves | Source code |
| padResultTable | Source code |
| performComparison | Source code |
| plotFDRVsExpr | Source code |
| plotMASignificant | Source code |
| plotResultTable | Source code |
| plotScoreVsExpr | Source code |
| plotScoreVsOutliers | Source code |
| plotSignalForZeroCounts | Source code |
| runComparison | Man page Source code |
| runComparisonGUI | Man page Source code |
| runDiffExp | Man page Source code |
| shorten.method.names | Source code |
| show,compData-method | Man page |
| sqrtcpm.limma.createRmd | Man page Source code |
| summarizeSyntheticDataSet | Man page Source code |
| ttest.createRmd | Man page Source code |
| voom.limma.createRmd | Man page Source code |
| voom.ttest.createRmd | Man page Source code |
