R/compcodeR-package.R

In compcodeR: RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods

#' RNAseq data simulation, differential expression analysis and 
#' performance comparison of differential expression methods
#' 
#' This package provides extensive functionality for comparing 
#' results obtained by different methods for differential expression analysis
#' of RNAseq data. It also contains functions for simulating count data and
#' interfaces to several packages for performing the differential expression analysis.
#' @name compcodeR-package
#' @aliases compcodeR
#' @docType package
#' @import tcltk knitr markdown ROCR lattice gplots gtools gdata caTools grid KernSmooth MASS ggplot2 stringr modeest limma edgeR vioplot methods
#' @title RNAseq data simulation, differential expression analysis and 
#' performance comparison of differential expression methods
#' @author Charlotte Soneson
#' @keywords package
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