Man pages for consensusSeekeR
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
| A549_CTCF_MYJ_NarrowPeaks_partial | Sites with the greatest evidence of transcription factor... |
| A549_CTCF_MYJ_Peaks_partial | Sites with the greatest evidence of transcription factor... |
| A549_CTCF_MYN_NarrowPeaks_partial | Sites with the greatest evidence of transcription factor... |
| A549_CTCF_MYN_Peaks_partial | Sites with the greatest evidence of transcription factor... |
| A549_FOSL2_01_NarrowPeaks_partial | Genomic regions with the greatest evidence of transcription... |
| A549_FOSL2_01_Peaks_partial | Sites with the greatest evidence of transcription factor... |
| A549_FOXA1_01_NarrowPeaks_partial | Genomic regions with the greatest evidence of transcription... |
| A549_FOXA1_01_Peaks_partial | Sites with the greatest evidence of transcription factor... |
| A549_NR3C1_CFQ_NarrowPeaks_partial | Ranges with the greatest evidence of transcription factor... |
| A549_NR3C1_CFQ_Peaks_partial | Sites with the greatest evidence of transcription factor... |
| A549_NR3C1_CFR_NarrowPeaks_partial | Ranges with the greatest evidence of transcription factor... |
| A549_NR3C1_CFR_Peaks_partial | Sites with the greatest evidence of transcription factor... |
| A549_NR3C1_CFS_NarrowPeaks_partial | Ranges with the greatest evidence of transcription factor... |
| A549_NR3C1_CFS_Peaks_partial | Sites with the greatest evidence of transcription factor... |
| consensusSeekeR-package | consensusSeekeR: Detection of consensus peak regions inside a... |
| findConsensusPeakRegions | Extract regions sharing features in more than one experiment |
| findConsensusPeakRegionsForOneChrom | Extract regions sharing features in more than one experiment... |
| findConsensusPeakRegionsValidation | Parameter validation for the 'findConsensusPeakRegions'... |
| isInteger | Validate if a value is an integer |
| NOrMAL_nucleosome_positions | Nucleosome positions detected by the NOrMAL software using... |
| NOrMAL_nucleosome_ranges | Ranges associated to nucleosomes detected by the NOrMAL... |
| NucPosSimulator_nucleosome_positions | Nucleosome positions detected by the NucPosSimulator software... |
| NucPosSimulator_nucleosome_ranges | Ranges associated to nucleosomes detected by the... |
| PING_nucleosome_positions | Nucleosome positions detected by the PING software using... |
| PING_nucleosome_ranges | Ranges associated to nucleosomes detected by the PING... |
| readNarrowPeakFile | Extract narrow regions and peaks from a narrrowPeak file |
| refineRegion | Refine the selected region by using an iterative process. |
