Files in consensusSeekeR

Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/NOrMAL_nucleosome_positions.RData

data/A549_FOSL2_01_NarrowPeaks_partial.RData

data/A549_CTCF_MYJ_NarrowPeaks_partial.RData

data/A549_NR3C1_CFS_NarrowPeaks_partial.RData

data/PING_nucleosome_ranges.RData

data/NucPosSimulator_nucleosome_ranges.RData

data/A549_CTCF_MYN_Peaks_partial.RData

data/A549_NR3C1_CFQ_NarrowPeaks_partial.RData

data/A549_NR3C1_CFR_Peaks_partial.RData

data/A549_FOXA1_01_NarrowPeaks_partial.RData

data/A549_NR3C1_CFS_Peaks_partial.RData

data/A549_NR3C1_CFQ_Peaks_partial.RData

data/NOrMAL_nucleosome_ranges.RData

data/A549_CTCF_MYN_NarrowPeaks_partial.RData

data/PING_nucleosome_positions.RData

data/A549_FOXA1_01_Peaks_partial.RData

data/A549_NR3C1_CFR_NarrowPeaks_partial.RData

data/A549_FOSL2_01_Peaks_partial.RData

data/NucPosSimulator_nucleosome_positions.RData

data/A549_CTCF_MYJ_Peaks_partial.RData

R/findConsensusPeakRegions.R R/consensusSeekeR.R R/findConsensusPeakRegionsIntern.R R/readNarrowPeak.R

vignettes/consensusSeekeR.bibtex

vignettes/consensusSeekeR.Rmd

vignettes/figures/ctcf_consensus.jpg

vignettes/figures/sizeEffect.jpg

vignettes/figures/nucleosomes.jpg

vignettes/figures/shrink.jpg

vignettes/figures/peak_and_region.jpg

vignettes/figures/extendNew.jpg

vignettes/figures/NR3C1_consensus.jpg

man/A549_NR3C1_CFR_NarrowPeaks_partial.Rd man/A549_FOXA1_01_Peaks_partial.Rd man/A549_NR3C1_CFQ_Peaks_partial.Rd man/findConsensusPeakRegions.Rd man/findConsensusPeakRegionsForOneChrom.Rd man/PING_nucleosome_ranges.Rd man/PING_nucleosome_positions.Rd man/findConsensusPeakRegionsValidation.Rd man/A549_NR3C1_CFQ_NarrowPeaks_partial.Rd man/A549_CTCF_MYJ_NarrowPeaks_partial.Rd man/A549_FOSL2_01_Peaks_partial.Rd man/A549_NR3C1_CFS_Peaks_partial.Rd man/A549_FOXA1_01_NarrowPeaks_partial.Rd man/A549_CTCF_MYN_Peaks_partial.Rd man/consensusSeekeR-package.Rd man/NOrMAL_nucleosome_ranges.Rd man/A549_CTCF_MYJ_Peaks_partial.Rd man/NucPosSimulator_nucleosome_ranges.Rd man/NOrMAL_nucleosome_positions.Rd man/isInteger.Rd man/A549_CTCF_MYN_NarrowPeaks_partial.Rd man/A549_NR3C1_CFS_NarrowPeaks_partial.Rd man/A549_NR3C1_CFR_Peaks_partial.Rd man/NucPosSimulator_nucleosome_positions.Rd man/refineRegion.Rd man/readNarrowPeakFile.Rd man/A549_FOSL2_01_NarrowPeaks_partial.Rd tests/runTests.R

inst/CITATION

inst/doc/consensusSeekeR.R inst/doc/consensusSeekeR.Rmd

inst/doc/consensusSeekeR.html

inst/extdata/Hosa_A549_FOSL2_ENCSR000BQO_MZW_peaks_part_chr1_and_12.narrowPeak

inst/extdata/A549_FOSL2_ENCSR000BQO_MZW_part_chr_1_and_12.narrowPeak

inst/extdata/Hosa_A549_FOSL2_ENCSR000BQO_MZT_peaks_part_chr1_and_12.narrowPeak

inst/unitTests/test_findConsensusPeakRegionsIntern.R inst/unitTests/test_findConsensusPeakRegions.R inst/unitTests/test_readNarrowPeak.R inst/unitTests/Makefile.R

consensusSeekeR documentation built on Nov. 8, 2020, 4:54 p.m.