Dimensionality reduction and batch integration methods for single cell data
corral is a package to perform correspondence analysis on count data, particularly for single-cell (e.g., RNA-seq).
It can be used on a single table for dimensionality reduction, or it can be used for integration across batches, samples, and modes.
To install the dev version: devtools::install_github('laurenhsu1/corral')
Or it can be installed with BiocManager::install("laurenhsu1/corral", dependencies = TRUE)
The package contains two main function calls:
corral
for dimensionality reduction on a single table corralm
for alignment and batch integration of multiple tablesSee the vignettes for details on outputs and how to plot.
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