sce2matlist: SingleCellExperiment to list of matrices
In corral: Correspondence Analysis for Single Cell Data

SingleCellExperiment to list of matrices

1	sce2matlist(sce, splitby, to_include = NULL, whichmat = "counts")

`sce`	SingleCellExperiment that is to be separated into list of count matrices
`splitby`	character; name of the attribute from colData that should be used to separate the SCE
`to_include`	(optional) character vector; determines which values from the "splitby" column will be included in the outputted matlist. NULL is the default, and will result in selecting all elements
`whichmat`	character; defaults to `counts`, can also use `logcounts` or `normcounts` if stored in the `sce` object

list of matrices

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library(DuoClustering2018)
sce <- sce_full_Zhengmix4eq()
matlist <- sce2matlist(sce = sce, splitby = 'phenoid', whichmat = 'logcounts')

corral documentation built on Nov. 8, 2020, 8:25 p.m.

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