API for coseq
Co-Expression Analysis of Sequencing Data
| Global functions | |
|---|---|
| DDSEextract | Man page |
| DDSEextract,Capushe-method | Man page |
| Djumpextract | Man page |
| Djumpextract,Capushe-method | Man page |
| ICL | Man page |
| ICL,MixmodCluster-method | Man page |
| ICL,NULL-method | Man page |
| ICL,RangedSummarizedExperiment-method | Man page |
| ICL,coseqResults-method | Man page |
| ICL,mixmodCluster-method | Man page |
| NormMixClus | Man page Source code |
| NormMixClusK | Man page Source code |
| NormMixParam | Man page Source code |
| clusterEntropy | Man page Source code |
| clusterInertia | Man page Source code |
| clusters | Man page |
| clusters,RangedSummarizedExperiment-method | Man page |
| clusters,coseqResults-method | Man page |
| clusters,data.frame-method | Man page |
| clusters,matrix-method | Man page |
| compareARI | Man page |
| compareARI,RangedSummarizedExperiment-method | Man page |
| compareARI,coseqResults-method | Man page |
| compareARI,data.frame-method | Man page |
| compareARI,matrix-method | Man page |
| compareARI-methods | Man page |
| compareARI.coseqResults | Source code |
| compareARI.labels | Source code |
| compareARI.matrix | Source code |
| compareICL | Man page Source code |
| convertLegacyCoseq | Man page Source code |
| coseq | Man page |
| coseq,DESeqDataSet-method | Man page |
| coseq,data.frame-method | Man page |
| coseq,matrix-method | Man page |
| coseq-methods | Man page |
| coseq-package | Man page |
| coseqFullResults | Man page |
| coseqFullResults,coseqResults-method | Man page |
| coseqGlobalPlots | Man page Source code |
| coseqModelPlots | Man page Source code |
| coseqResults | Man page Source code |
| coseqResults-class | Man page |
| coseqRun | Man page Source code |
| fietz | Man page |
| kmeansProbaPost | Man page Source code |
| likelihood | Man page |
| likelihood,MixmodCluster-method | Man page |
| likelihood,NULL-method | Man page |
| likelihood,RangedSummarizedExperiment-method | Man page |
| likelihood,coseqResults-method | Man page |
| logclr | Man page Source code |
| matchContTable | Man page Source code |
| model | Man page |
| model,coseqResults-method | Man page |
| nbCluster | Man page |
| nbCluster,MixmodCluster-method | Man page |
| nbCluster,NULL-method | Man page |
| nbCluster,RangedSummarizedExperiment-method | Man page |
| nbCluster,coseqResults-method | Man page |
| plot | Man page |
| plot,coseqResults-method | Man page |
| plot-methods | Man page |
| proba | Man page |
| proba,MixmodCluster-method | Man page |
| profiles | Man page |
| profiles,coseqResults-method | Man page |
| show | Man page |
| show,coseqResults-method | Man page |
| summary | Man page |
| summary,coseqResults-method | Man page |
| summary-methods | Man page |
| tcounts | Man page |
| tcounts,coseqResults-method | Man page |
| transformRNAseq | Man page Source code |
| transformationType | Man page |
| transformationType,coseqResults-method | Man page |
