fietz: RNA-seq data from the mouse neocortex in Fietz et al. (2012)

In coseq: Co-Expression Analysis of Sequencing Data

Description

This dataset represents RNA-seq data from mouse neocortex RNA-seq data in five embryonic (day 14.5) mice by analyzing the transcriptome of three regions: the ventricular zone (VZ), subventricular zone (SVZ) and cortical place (CP).

Usage

data(fietz)

Format

An ExpressionSet named fietz.eset containing the phenotype data and expression data for the Fietz et al. (2012) experiment. Phenotype data may be accessed using the pData function, and expression data may be accessed using the exprs function.

Value

Object of class ‘ExpressionSet’. Matrix of counts can be accessed after loading the ‘Biobase’ package and calling exprs(fietz)).

Source

Digital Expression Explorer (http://dee.bakeridi.edu.au/).

References

https://perso.math.univ-toulouse.fr/maugis/mixstatseq/packages

Fietz, S. A., et al. (2012). Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proceedings of the National Academy of Sciences, 109(29):11836-11841.

coseq documentation built on Nov. 8, 2020, 5:18 p.m.