Man pages for coseq
Co-Expression Analysis of Sequencing Data
| clusterEntropy | Calculation of per-cluster entropy |
| clusterInertia | Calculation of within-cluster inertia |
| compareARI | Pairwise comparisons of ARI values among a set of clustering... |
| compareICL | Compare corrected ICL values after data transformation |
| convertLegacyCoseq | Convert legacy coseq objects |
| coseq | Co-expression or co-abudance analysis of high-throughput... |
| coseqHelpers | Accessors for the assigned cluster labels of a coseqResults... |
| coseq-package | Co-expression and co-abundance analysis of high-throughput... |
| coseqResults | coseqResults object and constructor |
| coseqRun | Co-expression analysis |
| fietz | RNA-seq data from the mouse neocortex in Fietz et al. (2012) |
| kmeansProbaPost | Calculate conditional probabilities of cluster membership for... |
| logclr | Calculate the Log Centered Log Ratio (logCLR) transformation |
| matchContTable | Permute columns of a contingency table |
| NormMixClus | Normal mixture model estimation and selection for a series of... |
| NormMixClusK | Normal mixture model estimation |
| NormMixParam | Calculate the mean and covariance for a Normal mixture model |
| plot | Visualize results from coseq clustering |
| summary | Summarize results from coseq clustering |
| transformRNAseq | Transform RNA-seq data using common transformations |
