cosmiq: cosmiq - COmbining Single Masses Into Quantities

cosmiq is a tool for the preprocessing of liquid- or gas - chromatography mass spectrometry (LCMS/GCMS) data with a focus on metabolomics or lipidomics applications. To improve the detection of low abundant signals, cosmiq generates master maps of the mZ/RT space from all acquired runs before a peak detection algorithm is applied. The result is a more robust identification and quantification of low-intensity MS signals compared to conventional approaches where peak picking is performed in each LCMS/GCMS file separately. The cosmiq package builds on the xcmsSet object structure and can be therefore integrated well with the package xcms as an alternative preprocessing step.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cosmiq")
AuthorDavid Fischer <dajofischer@googlemail.com>, Christian Panse <cp@fgcz.ethz.ch>, Endre Laczko <endre.laczko@fgcz.uzh.ch>
Bioconductor views MassSpectrometry Metabolomics
Date of publicationNone
MaintainerDavid Fischer <dajofischer@googlemail.com>, Christian Panse <cp@fgcz.ethz.ch>
LicenseGPL-3
Version1.10.0
http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html

View on Bioconductor

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