README.md

In ctgGEM: Generating Tree Hierarchy Visualizations from Gene Expression Data

ctgGEM (cell tree generator for Gene Expression Matrices)

ctgGEM is an R package that combines a variety of visualization packages for single cell RNA tree hierarchies. This package provides users with a streamlined, simplified way to construct hierarchies from the workflows of these packages using one function call with a single centralized data object and the desired visualization package name as a parameter. Currently supported packages are:

• cellTree
• destiny
• monocle
• sincell
• TSCAN

For a guide on using the features of ctgGEM and the types of data required for each visualization, please see the package vignette.

Authors: Mark Block and Carrie Minette Maintainer: USD Biomedical Engineering [e-mail]

ctgGEM documentation built on Nov. 8, 2020, 5:54 p.m.