readCytosploreFCS: Read .fcs files created by cytosplore

In cytofast: cytofast - A quick visualization and analysis tool for CyTOF data

Description

This function reads and combines .FCS files created specifcally by Cytosplore.

Usage

readCytosploreFCS(dir = NULL, colNames = c("names", "description"))

Arguments

dir	directory containing the .FCS files created by Cytosplore
colNames	character string that specifies which label should be used as the column names. This could be the name of the markers 'names' or the description for the markers 'description'.

Value

The function returns an object of class data.frame. It includes both clusterID and sampleID as variables.

Note

This function is a wrapper around read.FCS. For more flexibility see their help page.

Examples

dirFCS <- system.file("extdata", package="cytofast")
cfData <- readCytosploreFCS(dir = dirFCS, colNames = "description")

cytofast documentation built on Nov. 8, 2020, 5:46 p.m.