doppelgangR: Identify likely duplicate samples from genomic or meta-data

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("doppelgangR")
AuthorLevi Waldron, Markus Riester, Marcel Ramos
Bioconductor views GeneExpression Microarray QualityControl RNASeq
Date of publicationNone
MaintainerLevi Waldron <lwaldron.research@gmail.com>
LicenseGPL (>=2.0)
Version1.2.0
https://github.com/lwaldron/doppelgangR

View on Bioconductor

Functions

corFinder Man page
DoppelGang Man page
DoppelGang-class Man page
doppelgangR Man page
doppelgangR-package Man page
dst Man page
mst.mle Man page
outlierFinder Man page
phenoDist Man page
phenoFinder Man page
plot,DoppelGang Man page
plot.DoppelGang Man page
plot,DoppelGang,ANY-method Man page
plot,DoppelGang-method Man page
plot.doppelgangR Man page
plot-methods Man page
print,DoppelGang-method Man page
print-methods Man page
pst Man page
qst Man page
rst Man page
show,DoppelGang-method Man page
show-methods Man page
smokingGunFinder Man page
st.mle Man page
summary,DoppelGang-method Man page
summary-methods Man page
vectorHammingDist Man page
vectorWeightedDist Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.