doppelgangR: Identify likely duplicate samples from genomic or meta-data

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).

Package details

AuthorLevi Waldron [aut, cre], Markus Reister [aut, ctb], Marcel Ramos [ctb]
Bioconductor views GeneExpression ImmunoOncology Microarray QualityControl RNASeq
MaintainerLevi Waldron <[email protected]>
LicenseGPL (>=2.0)
Package repositoryView on Bioconductor
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doppelgangR documentation built on Jan. 5, 2019, 6:31 p.m.