doppelgangR: Identify likely duplicate samples from genomic or meta-data
Version 1.6.0

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).

Package details

AuthorLevi Waldron, Markus Riester, Marcel Ramos
Bioconductor views GeneExpression Microarray QualityControl RNASeq
MaintainerLevi Waldron <[email protected]>
LicenseGPL (>=2.0)
Version1.6.0
URL https://github.com/lwaldron/doppelgangR
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("doppelgangR")

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doppelgangR documentation built on Nov. 17, 2017, 1:46 p.m.