DpeakMotif-class: Class "DpeakMotif"
In dpeak: dPeak (Deconvolution of Peaks in ChIP-seq Analysis)

Description Objects from the Class Slots Methods Author(s) See Also Examples

This class represents dPeak data.

Objects can be created by calls of the form new("DpeakMotif", ...).

motif:: Object of class "character", representing a vector of motifs.
locMotif:: Object of class "list", representing list of locations of motifs in candidate regions.
peakChr:: Object of class "character", representing a vector of chromosome of each peak.
peakStart:: Object of class "numeric", representing a vector of start position of each peak.
peakEnd:: Object of class "numeric", representing a vector of end position of each peak.

dpeakFit: signature(object = "DpeakMotif"): fit the deconvolution model.
show: signature(object = "DpeakMotif"): provide brief summary of the object.

Dongjun Chung

dpeakMotif, dpeakFit.

## Not run: 
library(BSgenome.Ecoli.NCBI.20080805)
resultMotif <- dpeakMotif( peakfile="vignettes/examplePeak.txt", refGenome=Ecoli )

## End(Not run)