DpeakMotif-class: Class "DpeakMotif"

Description Objects from the Class Slots Methods Author(s) See Also Examples

Description

This class represents dPeak data.

Objects from the Class

Objects can be created by calls of the form new("DpeakMotif", ...).

Slots

motif:

Object of class "character", representing a vector of motifs.

locMotif:

Object of class "list", representing list of locations of motifs in candidate regions.

peakChr:

Object of class "character", representing a vector of chromosome of each peak.

peakStart:

Object of class "numeric", representing a vector of start position of each peak.

peakEnd:

Object of class "numeric", representing a vector of end position of each peak.

Methods

dpeakFit

signature(object = "DpeakMotif"): fit the deconvolution model.

show

signature(object = "DpeakMotif"): provide brief summary of the object.

Author(s)

Dongjun Chung

See Also

dpeakMotif, dpeakFit.

Examples

1
2
3
4
5
## Not run: 
library(BSgenome.Ecoli.NCBI.20080805)
resultMotif <- dpeakMotif( peakfile="vignettes/examplePeak.txt", refGenome=Ecoli )

## End(Not run)

dpeak documentation built on Nov. 8, 2020, 7:45 p.m.