Files in dpeak

dPeak (Deconvolution of Peaks in ChIP-seq Analysis)

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/Makevars.win

src/stack.cpp

src/score.cpp

src/Makevars

src/dlength.cpp

src/normalize.cpp

src/ismaxZ0.cpp

src/fraglen.cpp

src/samp.cpp

data/exampleData.RData

R/methods_DpeakFit.R R/base_lineStrandData.R R/dpeakFit.R R/base_selectModel.R R/AllGenerics.R R/base_combineModelPET.R R/base_deconCoreSET.R R/base_stackFragment.R R/base_deconInitPET.R R/base_bg_SET.R R/methods_DpeakData.R R/base_combineModelSET.R R/dpeakRead.R R/base_deconWrapper.R R/base_plotFit.R R/base_deconInitSET.R R/methods_DpeakMotif.R R/dpeakMotif.R R/base_deconCorePET.R R/AllClasses.R R/base_generateFragment.R R/base_export.R R/base_plotBIC.R R/base_cpp_call.R R/base_plotStrandData.R R/base_loglikPET.R R/base_plotGOF.R R/base_constructExtRead.R R/base_loglikSET.R

vignettes/dataplot_strand.eps

vignettes/resultplot_strand.pdf

vignettes/resultplot_strand.eps

vignettes/GOF.eps

vignettes/resultplot_combined.eps

vignettes/resultplot_combined.pdf

vignettes/examplePeak.txt

vignettes/dataplot_combined.eps

vignettes/dpeak-example.Rnw

vignettes/dataplot_strand.pdf vignettes/dataplot_combined.pdf vignettes/GOF.pdf man/exportPlot.Rd man/exportPeakList.Rd man/DpeakMotif-class.Rd man/dpeak-package.Rd man/printEmpty.Rd man/dpeakRead.Rd man/DpeakFit-class.Rd man/dpeakMotif.Rd man/DpeakData-class.Rd man/dpeakFit.Rd man/exampleData.Rd man/dpeak-internal.Rd inst/doc/dpeak-example.pdf inst/doc/dpeak-example.R

inst/doc/dpeak-example.Rnw

inst/Perl/extract_coord_SET.pl

inst/Perl/extract_coord_PET.pl

dpeak documentation built on Nov. 8, 2020, 7:45 p.m.