ecolitk: Meta-data and tools for E. coli

Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ecolitk")
AuthorLaurent Gautier
Bioconductor views Annotation Visualization
Date of publicationNone
MaintainerLaurent Gautier <lgautier@gmail.com>
LicenseGPL (>= 2)
Version1.46.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/internalFuncs.R R/polygonCircle.R R/rotate.R R/wapply.R
build
build/vignette.rds
data
data/datalist
data/ecoli.genome.rda
data/ecoli.m52.genome.rda
data/ecoligenome.operon.rda
data/ecoligenomeBNUM.rda
data/ecoligenomeBNUM2ENZYME.rda
data/ecoligenomeBNUM2GENBANK.rda
data/ecoligenomeBNUM2GENEPRODUCT.rda
data/ecoligenomeBNUM2MULTIFUN.rda
data/ecoligenomeBNUM2STRAND.rda
data/ecoligenomeBNUM2SYMBOL.rda
data/ecoligenomeCHRLOC.rda
data/ecoligenomeMULTIFUN2GO.rda
data/ecoligenomeSTRAND.rda
data/ecoligenomeSYMBOL.rda
data/ecoligenomeSYMBOL2AFFY.rda
data/ecoligenomeSYMBOL2BNUM.rda
data/multiFun.rda
inst
inst/doc
inst/doc/ecolitk.R
inst/doc/ecolitk.Rnw
inst/doc/ecolitk.pdf
man
man/ecoli.data.Rd man/ecoligenome.operon.Rd man/ecoligenomeBNUM.Rd man/ecoligenomeBNUM2MULTIFUN.Rd man/gccontent.Rd man/linkedmultiget.Rd man/multiFun.Rd man/pointsCircle.Rd man/polar2xy.Rd man/polygonChrom.Rd man/wstringapply.Rd
vignettes
vignettes/00Index.dcf
vignettes/ecolitk.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.