ecolitk: Meta-data and tools for E. coli

Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.

Author
Laurent Gautier
Date of publication
None
Maintainer
Laurent Gautier <lgautier@gmail.com>
License
GPL (>= 2)
Version
1.46.0

View on Bioconductor

Man pages

ecoli.data
Escherichia coli data
ecoligenomeBNUM
Environment for 'bnum' identifiers
ecoligenomeBNUM2MULTIFUN
Environment
ecoligenome.operon
Known operon in E.coli - data.frame
gccontent
function to compute gccontent
linkedmultiget
A function to look for values across linked environments
multiFun
multiFun classification
pointsCircle
Functions to plot circular related figures
polar2xy
Functions to perform polar coordinate related functions
polygonChrom
Functions to plot circular chromosomes informations
wstringapply
Apply a function on a window sliding on a string

Files in this package

ecolitk/DESCRIPTION
ecolitk/NAMESPACE
ecolitk/R
ecolitk/R/internalFuncs.R
ecolitk/R/polygonCircle.R
ecolitk/R/rotate.R
ecolitk/R/wapply.R
ecolitk/build
ecolitk/build/vignette.rds
ecolitk/data
ecolitk/data/datalist
ecolitk/data/ecoli.genome.rda
ecolitk/data/ecoli.m52.genome.rda
ecolitk/data/ecoligenome.operon.rda
ecolitk/data/ecoligenomeBNUM.rda
ecolitk/data/ecoligenomeBNUM2ENZYME.rda
ecolitk/data/ecoligenomeBNUM2GENBANK.rda
ecolitk/data/ecoligenomeBNUM2GENEPRODUCT.rda
ecolitk/data/ecoligenomeBNUM2MULTIFUN.rda
ecolitk/data/ecoligenomeBNUM2STRAND.rda
ecolitk/data/ecoligenomeBNUM2SYMBOL.rda
ecolitk/data/ecoligenomeCHRLOC.rda
ecolitk/data/ecoligenomeMULTIFUN2GO.rda
ecolitk/data/ecoligenomeSTRAND.rda
ecolitk/data/ecoligenomeSYMBOL.rda
ecolitk/data/ecoligenomeSYMBOL2AFFY.rda
ecolitk/data/ecoligenomeSYMBOL2BNUM.rda
ecolitk/data/multiFun.rda
ecolitk/inst
ecolitk/inst/doc
ecolitk/inst/doc/ecolitk.R
ecolitk/inst/doc/ecolitk.Rnw
ecolitk/inst/doc/ecolitk.pdf
ecolitk/man
ecolitk/man/ecoli.data.Rd
ecolitk/man/ecoligenome.operon.Rd
ecolitk/man/ecoligenomeBNUM.Rd
ecolitk/man/ecoligenomeBNUM2MULTIFUN.Rd
ecolitk/man/gccontent.Rd
ecolitk/man/linkedmultiget.Rd
ecolitk/man/multiFun.Rd
ecolitk/man/pointsCircle.Rd
ecolitk/man/polar2xy.Rd
ecolitk/man/polygonChrom.Rd
ecolitk/man/wstringapply.Rd
ecolitk/vignettes
ecolitk/vignettes/00Index.dcf
ecolitk/vignettes/ecolitk.Rnw