R Documentation Repository
: Engineering Evaluation by Gene Categorization (eegc)
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barplotEnrich: Barplot the enrichResult
cate.gene: Categorized genes
categorizeGene: Gene Categorization
cate.ratio: Expression Difference ratios of categorized genes
densityPlot: Quantify Genes and Corresponding ED ratios in Each Category
diffGene: Gene Expression Differential Analysis
diffgene.genes: Differential genes for three comparisons
dotPercentage: Percentage Calculation and Visualization
enrichment: Enrichment Analysis by Hypergeometric Distribution Test
expr.filter: Filtered expression data
functionEnrich: Funtional Enrichment Analysis
goenrich: GO enrichment results
grnPlot: Gene Regulatory Network Plot
heatmapPlot: Heatmap Plot of Enriched Terms
human.gene: Gene regulatory network based human cell/tissue-specific gene...
human.grn: Human cell/tissue-specific gene-gene regulation
human.tf: Gene regulatory network based human cell/tissue-specific...
markers: Marker genes
markerScatter: Scatter Plot for Gene Expression
mouse.gene: Gene regulatory network based mouse cell/tissue-specific gene...
mouse.grn: Mouse cell/tissue-specific gene-gene regulation
mouse.tf: Gene regulatory network based mouse cell/tissue-specific...
networkAnalyze: Network Topological Analysis
SandlerFPKM: RNA-seq data in FPKM A data frame containing 16692 gene in 7...
tissueGenes: Cell/Tissue specific gene sets
tissueGroup: Tissue mapping to groups
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