| ensemblVEP | Query Ensembl Variant Effect Predictor |
| oldRuntimeOptions | VEPParam runtime options |
| parseCSQToGRanges | Parse the CSQ column of a VCF object into a GRanges object |
| runtimeOptions | VEPParam runtime options |
| VEPFlags-class | VEPFlag objects |
| VEPParam-class | VEPParam objects |
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