ErmaSet-class: Class '"ErmaSet"'

In erma: epigenomic road map adventures

Description

Wrap a GenomicFiles instance representing roadmap bed files.

Usage

makeErmaSet()
subsetByRanges( ermaset, range )

Arguments

ermaset	an instance of ErmaSet-class
range	an instance of GRanges-class

Objects from the Class

Objects can be created by calls of the form new("ErmaSet", ...). Simple extension of GenomicFiles.

Slots

files:

Object of class "ANY" ~~

rowRanges:

Object of class "GenomicRangesORGRangesList" ~~

colData:

Object of class "DataFrame" ~~

assays:

Object of class "Assays" ~~

NAMES:

Object of class "character_OR_NULL" ~~

elementMetadata:

Object of class "DataFrame" ~~

metadata:

Object of class "list" ~~

Extends

Class "GenomicFiles-class", directly. Class "RangedSummarizedExperiment-class", by class "GenomicFiles", distance 2. Class "SummarizedExperiment-class", by class "GenomicFiles", distance 3. Class "Vector", by class "GenomicFiles", distance 4. Class "Annotated", by class "GenomicFiles", distance 5.

Methods

cellTypes

signature(x = "ErmaSet"): ...

Note

We would like to have methods for AnnotationHub entities too.

Examples

showClass("ErmaSet")
makeErmaSet()

erma documentation built on Nov. 8, 2020, 5:39 p.m.