erma: epigenomic road map adventures

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Software and data to support epigenomic road map adventures.

Author
VJ Carey <stvjc@channing.harvard.edu>
Date of publication
None
Maintainer
VJ Carey <stvjc@channing.harvard.edu>
License
Artistic-2.0
Version
0.6.0

View on Bioconductor

Man pages

erma-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("erma")}
ErmaSet-class
Class '"ErmaSet"'
genemodel
create GRanges instance with model for a gene
mapmeta
create a DataFrame instance providing metadata about the...
stateProfile
create a ggplot2 visualization of chromatin states over...
states_25
metadata on states of 25-state model of chromatin from...

Files in this package

erma/DESCRIPTION
erma/NAMESPACE
erma/R
erma/R/allbed.R
erma/R/fixNonASCII.R
erma/R/geneTxRange.R
erma/R/genemodel.R
erma/R/makeErmaSet.R
erma/R/mapmeta.R
erma/R/rgbByState.R
erma/R/stateProfile.R
erma/R/stp2.R
erma/R/stp3.R
erma/R/stp4.R
erma/build
erma/build/partial.rdb
erma/build/vignette.rds
erma/data
erma/data/abbCIcols.rda
erma/data/abbCIstates.rda
erma/data/datalist
erma/data/farhSE.rda
erma/data/short_celltype.rda
erma/data/states_25.rda
erma/inst
erma/inst/bed_tabix
erma/inst/bed_tabix/E002_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E002_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E003_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E003_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E021_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E021_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E032_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E032_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E033_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E033_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E034_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E034_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E035_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E035_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E037_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E037_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E038_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E038_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E040_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E040_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E041_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E041_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E042_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E042_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E044_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E044_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E045_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E045_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E046_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E046_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E047_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E047_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E048_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E048_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E061_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E061_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E062_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E062_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E063_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E063_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E065_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E065_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E066_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E066_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E067_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E067_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E068_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E068_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E069_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E069_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E070_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E070_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E071_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E071_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E072_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E072_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E073_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E073_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E088_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E088_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/bed_tabix/E096_25_imputed12marks_mnemonics.bed.gz
erma/inst/bed_tabix/E096_25_imputed12marks_mnemonics.bed.gz.tbi
erma/inst/doc
erma/inst/doc/erma.R
erma/inst/doc/erma.Rmd
erma/inst/doc/erma.html
erma/inst/metadata_csv
erma/inst/metadata_csv/jul2013.roadmapData.qc.csv
erma/inst/pngs
erma/inst/pngs/emparms.png
erma/man
erma/man/ErmaSet-class.Rd
erma/man/erma-package.Rd
erma/man/genemodel.Rd
erma/man/mapmeta.Rd
erma/man/stateProfile.Rd
erma/man/states_25.Rd
erma/vignettes
erma/vignettes/erma.Rmd