getSignificance: Perform significance testing between groups and enrichement...
In escape: Easy single cell analysis platform for enrichment
Description
Usage
Arguments
Value
See Also
Examples
Description
This functions takes the enrichment scores and performs statistical
testing to evaluate the difference by group selected. The function
can perform 3 tests: 1) linear model based on the limma package,
2) Welch's T test, and 3) one-way ANOVA. The output includes
adjusted p-values based on the Benjamini Hochberg method.
Usage
1
getSignificance(enriched, group = NULL, fit = "linear.model")
Arguments
enriched
The output of enrichIt.
group
The parameter to group for the comparison, should a column of
the enriched input
fit
The test used for significance, either linear.model, ANOVA,
or T.test
Value
Data frame of test statistics
See Also
enrichIt for generating enrichment scores.
Examples
1
2
3
ES2 <- readRDS(url(
"https://ncborcherding.github.io/vignettes/escape_enrichment_results.rds"))
output <- getSignificance(ES2, group = "Type", fit = "linear.model")
escape documentation built on Nov. 8, 2020, 8:21 p.m.
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Description Usage Arguments Value See Also Examples
Description
This functions takes the enrichment scores and performs statistical testing to evaluate the difference by group selected. The function can perform 3 tests: 1) linear model based on the limma package, 2) Welch's T test, and 3) one-way ANOVA. The output includes adjusted p-values based on the Benjamini Hochberg method.
Usage
1 | getSignificance(enriched, group = NULL, fit = "linear.model")
|
Arguments
enriched |
The output of |
group |
The parameter to group for the comparison, should a column of the enriched input |
fit |
The test used for significance, either linear.model, ANOVA, or T.test |
Value
Data frame of test statistics
See Also
enrichIt for generating enrichment scores.
Examples
1 2 3 | ES2 <- readRDS(url(
"https://ncborcherding.github.io/vignettes/escape_enrichment_results.rds"))
output <- getSignificance(ES2, group = "Type", fit = "linear.model")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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