flagme: Analysis of Metabolomics GC/MS Data

Fragment-level analysis of gas chromatography - mass spectrometry metabolomics data

AuthorMark Robinson <mark.robinson@imls.uzh.ch>, Riccardo Romoli <riccardo.romoli@unifi.it>
Date of publicationNone
MaintainerMark Robinson <mark.robinson@imls.uzh.ch>, Riccardo Romoli <riccardo.romoli@unifi.it>
LicenseLGPL (>= 2)
Version1.30.0

View on Bioconductor

Functions

addAMDISPeaks Man page
addChromaTOFPeaks Man page
addXCMSPeaks Man page
align,correlatioAligment Man page
betweenAlignment Man page
betweenAlignment-class Man page
betweenAlignment-show Man page
calcTimeDiffs Man page
clusterAlignment Man page
clusterAlignment-class Man page
clusterAlignment-plot Man page
clusterAlignment-show Man page
compress Man page
compress,clusterAlignment-method Man page
compress,peaksAlignment-method Man page
compress,progressiveAlignment-method Man page
correlationAlignment Man page
correlationAlignment-class Man page
correlationAlignment-class Man page
correlationAlignment-show Man page
correlationAlignment-show Man page
decompress Man page
decompress,clusterAlignment-method Man page
decompress,peaksAlignment-method Man page
decompress,progressiveAlignment-method Man page
dp Man page
eitherMatrix-class Man page
exportSpectra Man page
gatherInfo Man page
imputePeaks Man page
multipleAlignment Man page
multipleAlignment-class Man page
multipleAlignment-show Man page
normDotProduct Man page
parseChromaTOF Man page
parseELU Man page
peaksAlignment Man page
peaksAlignment-class Man page
peaksAlignment-plot Man page
peaksAlignment-show Man page
peaksDataset Man page
peaksDataset-class Man page
peaksDataset-plot Man page
peaksDataset-show Man page
plot Man page
.plotcA Man page
plot,clusterAlignment,ANY-method Man page
plot,clusterAlignment-method Man page
plotImage Man page
plotImage,peaksDataset-method Man page
.plotpA Man page
.plotpD Man page
plot,peaksAlignment,ANY-method Man page
plot,peaksAlignment-method Man page
plot,peaksDataset,ANY-method Man page
plot,peaksDataset-method Man page
plotSpectra Man page
progressiveAlignment Man page
progressiveAlignment-class Man page
progressiveAlignment-show Man page
retFatMatrix Man page
rmaFitUnit Man page
show,betweenAlignment-method Man page
show,clusterAlignment-method Man page
show, correlationAlignment, ANY-method Man page
show, correlationAlignment-method Man page
show,correlationAlignment-method Man page
show,correlationAlignment-method, ANY-methods Man page
show,multipleAlignment-method Man page
show,peaksAlignment-method Man page
show,peaksDataset-method Man page
show,progressiveAlignment-method Man page

Files

flagme/DESCRIPTION
flagme/NAMESPACE
flagme/R
flagme/R/0classes.R flagme/R/addXCMSPeaks.R flagme/R/betweenAlignment.R flagme/R/clusterAlignment.R flagme/R/correlationAlignment.R flagme/R/dp.R flagme/R/exportSpectra.R flagme/R/gatherInfo.R flagme/R/init.R flagme/R/metrics.R flagme/R/multipleAlignment.R flagme/R/parse.R flagme/R/peaksAlignment.R flagme/R/peaksDataset.R flagme/R/plotFragments.R flagme/R/plotSpectra.R flagme/R/progressiveAlignment.R flagme/R/retFatMatrix.R flagme/R/rmaFitUnit.R
flagme/build
flagme/build/vignette.rds
flagme/inst
flagme/inst/NEWS
flagme/inst/doc
flagme/inst/doc/flagme.R
flagme/inst/doc/flagme.Rnw
flagme/inst/doc/flagme.pdf
flagme/man
flagme/man/addAMDISPeaks.Rd flagme/man/addChromaTOFPeaks.Rd flagme/man/addXCMSPeaks.Rd flagme/man/betweenAlignment.Rd flagme/man/calcTimeDiffs.Rd flagme/man/clusterAlignment.Rd flagme/man/compress.Rd flagme/man/correlationAlignment-class.Rd flagme/man/correlationAlignment.Rd flagme/man/dp.Rd flagme/man/eitherMatrix.Rd flagme/man/exportSpectra.Rd flagme/man/gatherInfo.Rd flagme/man/imputePeaks.Rd flagme/man/multipleAlignment.Rd flagme/man/normDotProduct.Rd flagme/man/parseChromaTOF.Rd flagme/man/parseELU.Rd flagme/man/peaksAlignment.Rd flagme/man/peaksDataset.Rd flagme/man/plot.Rd flagme/man/plotImage.Rd flagme/man/plotSpectra.Rd flagme/man/progressiveAlignment.Rd flagme/man/retFatMatrix.Rd flagme/man/rmaFitUnit.Rd
flagme/src
flagme/src/dp.c
flagme/src/flagme.h
flagme/src/init.c
flagme/src/pearson.c
flagme/vignettes
flagme/vignettes/flagme.Rnw
flagme/vignettes/readme.txt

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.