Man pages for flagme
Analysis of Metabolomics GC/MS Data
| addAMDISPeaks | Add AMDIS peak detection results |
| addChromaTOFPeaks | Add ChromaTOF peak detection results |
| addXCMSPeaks | Add xcms/CAMERA peak detection results |
| betweenAlignment | Data Structure for "between" alignment of many GCMS samples |
| calcTimeDiffs | Calculate retention time shifts from profile alignments |
| clusterAlignment | Data Structure for a collection of all pairwise alignments of... |
| compress | Compress an alignment object |
| corPrt | Retention Time Penalized Correlation |
| dp | Dynamic programming algorithm, given a similarity matrix |
| dynRT | dynRT |
| eitherMatrix | The 'eitherMatrix' class |
| exportSpectra | exportSpectra |
| gatherInfo | Gathers abundance informations from an alignment |
| imputePeaks | Imputatin of locations of peaks that were undetected |
| multipleAlignment | Data Structure for multiple alignment of many GCMS samples |
| ndpRT | Retention Time Penalized Normalized Dot Product |
| normDotProduct | Normalized Dot Product |
| parseChromaTOF | Parser for ChromaTOF files |
| parseELU | Parser for ELU files |
| peaksAlignment | Data Structure for pairwise alignment of 2 GCMS samples |
| peaksDataset | Data Structure for raw GCMS data and peak detection results |
| plot | Plotting functions for GCMS data objects |
| plotImage | Plot of images of GCMS data |
| plotMultipleSpectra | plotMultipleSpectra |
| plotSpectra | plotSpectra |
| progressiveAlignment | Data Structure for progressive alignment of many GCMS samples |
| retFatMatrix | retFatMatrix |
| rmaFitUnit | Fits a robust linear model (RLM) for one metabolite |
