Subset: Subsetting Data Based on Clustering Results

In flowClust: Clustering for Flow Cytometry

Description

This method returns a subset of data upon the removal of outliers identified from the clustering (filtering) operations.

Usage

## S4 method for signature 'flowFrame,flowClust'
Subset(x, subset, ...)

## S4 method for signature 'flowFrame,tmixFilterResult'
Subset(x, subset, ...)

## S4 method for signature 'data.frame,flowClust'
Subset(x, subset, ...)

## S4 method for signature 'matrix,flowClust'
Subset(x, subset, ...)

## S4 method for signature 'vector,flowClust'
Subset(x, subset, ...)

## S4 method for signature 'ANY,flowClustList'
Subset(x, subset, ...)

## S4 method for signature 'flowFrame,tmixFilterResultList'
Subset(x, subset, ...)

Arguments

x	A numeric vector, matrix, data frame of observations, or object of class flowFrame. This is the object on which flowClust or filter was performed.
subset	Object returned from flowClust or filter.
...	Further arguments to be passed to or from other methods.

Value

An object which is a subset of x. It also retains the same class as x.

Usage

Subset(x, subset, ...)

Author(s)

Raphael Gottardo <[e-mail]>, Kenneth Lo <[e-mail]>

References

Lo, K., Brinkman, R. R. and Gottardo, R. (2008) Automated Gating of Flow Cytometry Data via Robust Model-based Clustering. Cytometry A 73, 321-332.

See Also

split, flowClust, filter

flowClust documentation built on Nov. 8, 2020, 7:34 p.m.