flowFlowJo: Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.
Version 1.22.0

FlowJo is a commercial GUI based software package from TreeStar Inc. for the visualization and analysis of flow cytometry data. One of the FlowJo standard export file types is the "FlowJo Workspace". This is an XML document that describes files and manipulations that have been performed in the FlowJo GUI environment. This package can take apart the FlowJo workspace and deliver the data into R in the flowCore paradigm.

AuthorJohn J. Gosink <gosinkj@amgen.com>
Date of publicationNone
MaintainerJohn J. Gosink <gosinkj@amgen.com>
LicenseGPL (>=3)
Version1.22.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowFlowJo")

Getting started

Package overview

Popular man pages

collectSummaryFlowInfo: Collect Population Statistics on Flow Files
flowFlowJo-package: Turn FlowJo workspaces into flowCore compliant objects
flowJoCompensate-methods: Compensate flow cytometry data the same way as FlowJo does
getFlowJoGates: getFlowJoGates
getFlowJoSummary: Summarize FlowJo Workspaces
readFlowJoList: Parse one or more FlowJo workspaces
simplifyGateNames: Standardize flow cytometry gate names
See all...

All man pages Function index File listing

Man pages

collectSummaryFlowInfo: Collect Population Statistics on Flow Files
createFlowReport: Produce a denormalized data frame of summary statistics and...
flowFlowJo-package: Turn FlowJo workspaces into flowCore compliant objects
flowJoCompensate-methods: Compensate flow cytometry data the same way as FlowJo does
getFlowJoGates: getFlowJoGates
getFlowJoSummary: Summarize FlowJo Workspaces
readFlowJoList: Parse one or more FlowJo workspaces
simplifyGateNames: Standardize flow cytometry gate names

Functions

Files

flowFlowJo/DESCRIPTION
flowFlowJo/NAMESPACE
flowFlowJo/R
flowFlowJo/R/AllClasses.R
flowFlowJo/R/AllGenerics.R
flowFlowJo/R/collectSummaryFlowInfo.R
flowFlowJo/R/createFlowReport.R
flowFlowJo/R/flowJoCompensate.R
flowFlowJo/R/gateNodeToFilterObject.R
flowFlowJo/R/gatherFlowJoGates.R
flowFlowJo/R/gatherFlowJoTransformations.R
flowFlowJo/R/getFlowJoCompMatrix.R
flowFlowJo/R/getFlowJoGates.R
flowFlowJo/R/getFlowJoSummary.R
flowFlowJo/R/getFlowJoVersion.R
flowFlowJo/R/getWellId.R
flowFlowJo/R/readFlowJoFile.R
flowFlowJo/R/readFlowJoList.R
flowFlowJo/R/simplifyGateNames.R
flowFlowJo/R/zzz.R
flowFlowJo/build
flowFlowJo/build/vignette.rds
flowFlowJo/inst
flowFlowJo/inst/doc
flowFlowJo/inst/doc/flowFlowJo.R
flowFlowJo/inst/doc/flowFlowJo.Rnw
flowFlowJo/inst/doc/flowFlowJo.pdf
flowFlowJo/inst/extdata
flowFlowJo/inst/extdata/DemoWorkspace.wsp
flowFlowJo/inst/extdata/fcsFiles
flowFlowJo/inst/extdata/fcsFiles/A01
flowFlowJo/inst/extdata/fcsFiles/A02
flowFlowJo/inst/extdata/fcsFiles/A03
flowFlowJo/inst/extdata/fcsFiles/B01
flowFlowJo/inst/extdata/fcsFiles/B02
flowFlowJo/inst/extdata/fcsFiles/B03
flowFlowJo/inst/extdata/fcsFiles/C01
flowFlowJo/inst/extdata/fcsFiles/C02
flowFlowJo/inst/extdata/fcsFiles/C03
flowFlowJo/man
flowFlowJo/man/collectSummaryFlowInfo.Rd
flowFlowJo/man/createFlowReport.Rd
flowFlowJo/man/flowFlowJo-package.Rd
flowFlowJo/man/flowJoCompensate-methods.Rd
flowFlowJo/man/getFlowJoGates.Rd
flowFlowJo/man/getFlowJoSummary.Rd
flowFlowJo/man/readFlowJoList.Rd
flowFlowJo/man/simplifyGateNames.Rd
flowFlowJo/vignettes
flowFlowJo/vignettes/flowFlowJo.Rnw
flowFlowJo documentation built on Sept. 12, 2016, 6:14 a.m.

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