convertFishalyserCsvToCountMatrix: Function to convert CSV output of the FISHalyseR automatic...

Description Usage Arguments Value Examples

View source: R/frenchfish.R

Description

Function to convert CSV output of the FISHalyseR automatic FISH splot counting software to a count matrix suitable for input to frenchFISH's getAutomaticCountsEstimates

Usage

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convertFishalyserCsvToCountMatrix(pathToFishalyserCsv)

Arguments

pathToFishalyserCsv

The path to the CSV file of automatic spot counts outputted by FISHalyseR

Value

A count matrix suitable for input to getAutomaticCountsEstimates

Examples

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probeCounts<-convertFishalyserCsvToCountMatrix(
    system.file("extdata", "SampleFISH.jpg_data.csv", package="frenchFISH"))

frenchFISH documentation built on Nov. 8, 2020, 6:57 p.m.