gage-internal: Internal functions

In gage: Generally Applicable Gene-set Enrichment for Pathway Analysis

Description

Not intended to be called by the users.

Details

These functions are not to be called by the user directly.

Function heatmap2 is revised based on the heatmap.2 function in package gplot. Secondary functions colorpanel, greenred, invalid and odd are identical to the version in gplots. gs.heatmap is a wrapper function of heatmap2 to visualize whole gene set perturbations.

Function vennDiagram2 is a revised form of function vennDiagram from package limma. Associated function vennCounts is identical to the version in limma.

Function kegg.species.code is identical to the version in pathview.

Functions deComp and rownorm were written by Weijun Luo, the author of gage package.

gage documentation built on Dec. 13, 2020, 2:01 a.m.