write_significant_regions: This function writes into a tab delimited file the...
In gaia: GAIA: An R package for genomic analysis of significant chromosomal aberrations.
Description
This function writes into a tab delimited file the significant aberrant regions having the following format:
Chromosome - Aberration Kind - Region Start [bp] - Region End [bp] - Region Size [bp] - q-value
Chromosome: The chromosome where the aberration is found
Aberration Kind: The kind of the aberration found for the region
Region Start [bp]: The bp starting point of the aberrant region
Region End [bp]: The bp ending point of the aberrant region
Region Size [bp]: The size of the region in terms of bp
q-value: The q-value assessed for the aberrant region
Value
This function return a matrix containing all significant aberrant regions.
Author(s)
Sandro Morganella et al.
Maintainer: S. Morganella <morganellaalx@gmail.com>
gaia documentation built on Nov. 8, 2020, 8:02 p.m.
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Description
This function writes into a tab delimited file the significant aberrant regions having the following format:
Chromosome - Aberration Kind - Region Start [bp] - Region End [bp] - Region Size [bp] - q-value
Chromosome: The chromosome where the aberration is found
Aberration Kind: The kind of the aberration found for the region
Region Start [bp]: The bp starting point of the aberrant region
Region End [bp]: The bp ending point of the aberrant region
Region Size [bp]: The size of the region in terms of bp
q-value: The q-value assessed for the aberrant region
Value
This function return a matrix containing all significant aberrant regions.
Author(s)
Sandro Morganella et al.
Maintainer: S. Morganella <morganellaalx@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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