API for geecc
Gene Set Enrichment Analysis Extended to Contingency Cubes
| Global functions | |
|---|---|
| .checkFormula | Source code |
| .filter_drop.insignif.layer | Source code |
| .filter_drop.lowl2or.layer | Source code |
| .filter_drop.wrongdir.layer | Source code |
| .filter_dropLayer | Source code |
| .getContingencyCube | Source code |
| .getContingencyTable | Source code |
| .getItemsInEachCategory | Source code |
| .getLoadedList | Source code |
| .getNamesOfEachCategory | Source code |
| .getNumberOfFactorLevels | Source code |
| .getOptOfCategory | Source code |
| .getTypeOf_transformTable | Source code |
| .haszerodim | Source code |
| .keepLayer | Source code |
| .loglinmodel | Source code |
| .my_separator | Source code |
| .onAttach | Source code |
| .onUnload | Source code |
| .performTest | Source code |
| .performTest_approx | Source code |
| .special1 | Source code |
| .transformTable | Source code |
| .translate | Source code |
| GO2level | Man page Source code |
| GO2list | Man page Source code |
| GO2offspring | Man page Source code |
| KEGG2list | Man page Source code |
| cf_intersect6 | Source code |
| cf_setdiff1 | Source code |
| cf_special1 | Source code |
| concub-class | Man page |
| concubfilter-class | Man page |
| drop.insignif.layer | Man page |
| drop.insignif.layer,concubfilter-method | Man page |
| drop.insignif.layer<- | Man page |
| drop.insignif.layer<-,concubfilter-method | Man page |
| drop.lowl2or.layer | Man page |
| drop.lowl2or.layer,concubfilter-method | Man page |
| drop.lowl2or.layer<- | Man page |
| drop.lowl2or.layer<-,concubfilter-method | Man page |
| drop.wrongdir.layer | Man page |
| drop.wrongdir.layer,concubfilter-method | Man page |
| drop.wrongdir.layer<- | Man page |
| drop.wrongdir.layer<-,concubfilter-method | Man page |
| filterConCub | Man page Source code |
| geecc | Man page |
| geecc-package | Man page |
| getTable | Man page |
| getTable,concub-method | Man page |
| get_gochildren | Source code |
| initialize,concub-method | Man page |
| initialize,concubfilter-method | Man page |
| intersectPresort | Man page Source code |
| marioni | Man page |
| minimum.l2or | Man page |
| minimum.l2or,concubfilter-method | Man page |
| minimum.l2or<- | Man page |
| minimum.l2or<-,concubfilter-method | Man page |
| p.value | Man page |
| p.value,concubfilter-method | Man page |
| p.value<- | Man page |
| p.value<-,concubfilter-method | Man page |
| plotConCub | Man page Source code |
| pval2star | Man page Source code |
| rcpp_hello_world | Source code |
| runConCub | Man page Source code |
| setdiffPresort | Man page Source code |
| show,concub-method | Man page |
| show,concubfilter-method | Man page |
| skip.min.group | Man page |
| skip.min.group,concubfilter-method | Man page |
| skip.min.group<- | Man page |
| skip.min.group<-,concubfilter-method | Man page |
| skip.min.obs | Man page |
| skip.min.obs,concubfilter-method | Man page |
| skip.min.obs<- | Man page |
| skip.min.obs<-,concubfilter-method | Man page |
| skip.zeroobs | Man page |
| skip.zeroobs,concubfilter-method | Man page |
| skip.zeroobs<- | Man page |
| skip.zeroobs<-,concubfilter-method | Man page |
| sortAscii | Man page Source code |
| test.direction | Man page |
| test.direction,concubfilter-method | Man page |
| test.direction<- | Man page |
| test.direction<-,concubfilter-method | Man page |
