gemini_prepare_input: Prepare input before Model creation

In gemini: GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens

Description

This is an internal function to GEMINI, allowing for data cleanup and preprocessing before a Model object is created. This removes any gene pairs targeting the same gene twice, and removes any empty samples/replicates.

Usage

gemini_prepare_input(Input, gene.columns, sample.col.name = "samplename")

Arguments

Input	An object of class gemini.input
gene.columns	a character vector of length(2)
sample.col.name	a character indicating the name of the sample column (default = "samplename")

Value

a (prepared) gemini.input object

Examples

data("Input", package = "gemini")
Input %<>% gemini_prepare_input(gene.columns = c("U6.gene", "H1.gene"))

gemini documentation built on Nov. 8, 2020, 8:22 p.m.