API for genbankr
Parsing GenBank files into semantically useful objects
| Global functions | |
|---|---|
| .chartxidToInt | Source code |
| .do_join_silliness | Source code |
| .genbanksum | Source code |
| .getGBfromNuccore | Source code |
| .getGeneIdLab | Source code |
| .getGeneIdVec | Source code |
| .gnMappingHlpr | Source code |
| .seqTypeFromLocus | Source code |
| .simple_rbind_dataframe | Source code |
| GBAccession | Man page Source code |
| GBAccession-class | Man page |
| GBFile-class | Man page |
| GBKFile-class | Man page |
| GenBankFile | Man page Source code |
| GenBankFile-class | Man page |
| GenBankRecord-class | Man page |
| `%||%` | Source code |
| accession | Man page |
| accession,GenBankRecord | Man page |
| accession,GenBankRecord-method | Man page |
| allna | Source code |
| assignTxsToGenes | Source code |
| cds,GenBankRecord-method | Man page |
| cdsBy,GenBankRecord | Man page |
| cdsBy,GenBankRecord-method | Man page |
| cheap_unsafe_data.frame | Source code |
| chk_outer_complement | Source code |
| definition | Man page |
| definition,GenBankRecord | Man page |
| definition,GenBankRecord-method | Man page |
| exons,GenBankRecord-method | Man page |
| exonsBy,GenBankRecord | Man page |
| exonsBy,GenBankRecord-method | Man page |
| fastwriteread | Source code |
| fill_stack_df | Source code |
| gbk-specific-api | Man page |
| genes,GenBankRecord-method | Man page |
| getSeq,GBAccession-method | Man page |
| getSeq,GenBankFile-method | Man page |
| getSeq,GenBankRecord-method | Man page |
| gn_from_vers | Source code |
| import,GenBankFile | Man page |
| import,GenBankFile,ANY,ANY-method | Man page |
| intergenic | Man page |
| intergenic,GenBankRecord-method | Man page |
| isCircular,GenBankRecord | Man page |
| isCircular,GenBankRecord-method | Man page |
| locus | Man page |
| locus,GenBankRecord | Man page |
| locus,GenBankRecord-method | Man page |
| makeTxDbFromGenBank | Man page |
| makeTxDbFromGenBank,GBAccession | Man page |
| makeTxDbFromGenBank,GBAccession-method | Man page |
| makeTxDbFromGenBank,GenBankRecord | Man page |
| makeTxDbFromGenBank,GenBankRecord-method | Man page |
| make_cdsgr | Source code |
| make_exongr | Source code |
| make_feat_gr | Source code |
| make_gbrecord | Man page Source code |
| make_genegr | Source code |
| make_txgr | Source code |
| make_varvr | Source code |
| match_cds_genes | Source code |
| otherFeatures | Man page |
| otherFeatures,GenBankRecord | Man page |
| otherFeatures,GenBankRecord-method | Man page |
| parseGenBank | Man page Source code |
| readAccession | Source code |
| readDefinition | Source code |
| readFeatures | Source code |
| readGenBank | Man page Source code |
| readKeywords | Source code |
| readLocus | Source code |
| readOrigin | Source code |
| readSource | Source code |
| readVersions | Source code |
| read_feat_attr | Source code |
| seqinfo,GenBankRecord | Man page |
| seqinfo,GenBankRecord-method | Man page |
| sources | Man page |
| sources,GenBankRecord | Man page |
| sources,GenBankRecord-method | Man page |
| strip_feat_type | Source code |
| strip_fieldname | Source code |
| strip_outer_operator | Source code |
| transcripts,GenBankRecord-method | Man page |
| variants | Man page |
| variants,GenBankRecord | Man page |
| variants,GenBankRecord-method | Man page |
| vers | Man page |
| vers,GenBankRecord | Man page |
| vers,GenBankRecord-method | Man page |
