Description Usage Arguments Value Examples
Makes cumulative differential line plots showing the cumulative sums of the number of genes under peaks at consecutive upstream extension levels.
1 | cumlinePlot(organism, start, end, by)
|
organism |
Object name assigned from readGFF() command. |
start |
Lower bound of upstream extension. |
end |
Upper bound of upstream extension. |
by |
Interval between consecutive extensions. |
Creates cumulative differential line plots.
1 2 3 4 5 | library(rtracklayer)
rat <- readGFF("ftp://ftp.ensembl.org/pub/release-84/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_6.0.84.gtf.gz")
fpath <- system.file("extdata", "somepeaksfile.txt", package="geneXtendeR")
peaksInput(fpath)
cumlinePlot(rat, 1000, 3000, 100)
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