linePlot: Produces line plots.

Description Usage Arguments Value Examples

View source: R/linePlot.r

Description

Makes differential line plots showing the differences in the number of genes under peaks at consecutive upstream extension levels.

Usage

1
linePlot(organism, start, end, by)

Arguments

organism

Object name assigned from readGFF() command.

start

Lower bound of upstream extension.

end

Upper bound of upstream extension.

by

Interval between consecutive extensions.

Value

Creates differential line plots.

Examples

1
2
3
4
5
library(rtracklayer)
rat <- readGFF("ftp://ftp.ensembl.org/pub/release-84/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_6.0.84.gtf.gz")
fpath <- system.file("extdata", "somepeaksfile.txt", package="geneXtendeR")
peaksInput(fpath)
linePlot(rat, 1000, 3000, 100)

geneXtendeR documentation built on Nov. 1, 2018, 3:34 a.m.