geneplotter: Graphics related functions for Bioconductor

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Functions for plotting genomic data

Author
R. Gentleman, Biocore
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
Artistic-2.0
Version
1.52.0

View on Bioconductor

Man pages

alongChrom
A function for plotting expression data from an ExpressionSet...
amplicon.plot
Create an amplicon plot
cColor
A function for marking specific probes on a cPlot.
cPlot
A plotting function for chromosomes.
cScale
A function for mapping chromosome length to a number of...
eset133a
A small dataset for testing
GetColor
A function to get the Red-Blue color scheme used by dChip
groupedHeatmap
Heatmap of a matrix with grouped rows and columns
histStack
Stacked histogram
imageMap
Write an HTML IMG tag together with a MAP image map.
make.chromOrd
Make a chromOrd object
Makesense
Produce Smoothed Sense/Anti-sense For All Chromosomes
multiecdf
Multiple empirical cumulative distribution functions (ecdf)...
openHtmlPage
Open and close an HTML file for writing.
plotChr
Plot Smoothed Sense/Anti-sense of Specified Chromosomes
plotExpressionGraph
A function to plot a graph colored by expression data
plotMA
Generate an MA plot
savepng
Save the contents of the current graphics device to a file

Files in this package

geneplotter/DESCRIPTION
geneplotter/NAMESPACE
geneplotter/R
geneplotter/R/Makesense.R
geneplotter/R/alongChrom.R
geneplotter/R/amplicon.plot.R
geneplotter/R/cPlot.R
geneplotter/R/cScale.R
geneplotter/R/gplotter.R
geneplotter/R/groupedHeatmap.R
geneplotter/R/histStack.R
geneplotter/R/imageMap.R
geneplotter/R/multiecdf.R
geneplotter/R/openHtmlPage.R
geneplotter/R/plotChr.R
geneplotter/R/plotExpression.R
geneplotter/R/plotMA.R
geneplotter/R/savepng.R
geneplotter/R/zzz.R
geneplotter/README
geneplotter/build
geneplotter/build/vignette.rds
geneplotter/data
geneplotter/data/IMCAEntrezLink.R
geneplotter/data/expressionSet133a.rda
geneplotter/inst
geneplotter/inst/NEWS.Rd
geneplotter/inst/doc
geneplotter/inst/doc/byChroms.R
geneplotter/inst/doc/byChroms.Rnw
geneplotter/inst/doc/byChroms.pdf
geneplotter/inst/doc/visualize.R
geneplotter/inst/doc/visualize.Rnw
geneplotter/inst/doc/visualize.pdf
geneplotter/man
geneplotter/man/GetColor.Rd
geneplotter/man/Makesense.Rd
geneplotter/man/alongChrom.Rd
geneplotter/man/amplicon.plot.Rd
geneplotter/man/cColor.Rd
geneplotter/man/cPlot.Rd
geneplotter/man/cScale.Rd
geneplotter/man/eset133a.Rd
geneplotter/man/groupedHeatmap.Rd
geneplotter/man/histStack.Rd
geneplotter/man/imageMap.Rd
geneplotter/man/make.chromOrd.Rd
geneplotter/man/multiecdf.Rd
geneplotter/man/openHtmlPage.Rd
geneplotter/man/plotChr.Rd
geneplotter/man/plotExpressionGraph.Rd
geneplotter/man/plotMA.Rd
geneplotter/man/savepng.Rd
geneplotter/vignettes
geneplotter/vignettes/byChroms.Rnw
geneplotter/vignettes/visualize.Rnw