imageMap: Write an HTML IMG tag together with a MAP image map.
In geneplotter: Graphics related functions for Bioconductor

Description Usage Arguments Details Value Author(s) See Also Examples

Write an HTML IMG tag together with a MAP image map.

1 2	## S4 method for signature 'matrix,connection,list,character' imageMap(object, con, tags, imgname)

`object`	Matrix with 4 columns, specifying the coordinates of the mouse-sensitive region . Each row specifies the corners of a rectangle within the image, in the following order: (left x, lower y, right x, upper y). Note that the point (x=0, y=0) is at the left upper side of the image.
`con`	Connection to which the image map is written.
`tags`	Named list whose elements are named character vectors. Names must correspond to node names in `object`. See details.
`imgname`	Character. Name of the image file (for example PNG file) that contains the plot.

The most important tags are TITLE, HREF, and TARGET. If the list tags contains an element with name TITLE, then this must be a named character vector containing the tooltips that are to be displayed when the mouse moves over a node. The names of the nodes are specified in the names attribute of the character vector and must match those of object.

Similarly, HREF may be used to specify hyperlinks that the browser can follow when the mouse clicks on a node, and TARGET to specify the target browser window.

Currently, only rectangular regions are implemented; the actual shape of the nodes as specified in object is ignored. Also, tags for edges of the graph are currently not supported.

This function is typically used with the following sequence of steps:

generate your graphic and save it as a bitmap file, e.g. using the jpeg, png, or bitmap device. At this stage, you also need to figure out the pixel coordinates of the interesting regions within your graphic. Since the mapping between device coordinates and pixel coordinates is not obvious, this may be a little tricky. See the examples below, and for a more complex example, see the source code of the function plotPlate.
open an HTML page for writing and write HTML header, e.g. using the openHtmlPage function.
Call the imageMap function.
Optionally, write further text into the HTML connection.
Close HTML file, e.g. using the closeHtmlPage function.

The function is called for its side effect, which is writing text into the connection con.

Wolfgang Huber http://www.dkfz.de/abt0840/whuber

plotPlate, writeLines

f1  = paste(tempfile(), ".html", sep="")
f2  = paste(tempfile(), ".html", sep="")
fpng = tempfile()

if(capabilities()["png"]) {
  ## create the image
  colors = c("#E41A1C","#377EB8","#4DAF4A","#984EA3","#FF7F00","#FFFF33","#A65628","#F781BF","#999999")
  width  = 512
  height = 256
  png(fpng, width=width, height=height)
  par(mai=rep(0,4))
  plot(0,xlim=c(0,width-1),ylim=c(0,height-1),xaxs="i",yaxs="i",type="n",bty="n")
  cx=floor(runif(100)*(width-11))
  cy=floor(runif(100)*(height-11))
  coord=cbind(cx, cy, cx+10, cy+10)
  rect(coord[,1], height-coord[,2], coord[,3], height-coord[,4],
       col=sample(colors, 100, replace=TRUE))
  text(width/2, height-3, "Klick me!", adj=c(0.5, 1), font=2)
  dev.off()

  ## create the frame set
  cat("<html><head><title>Hello world</title></head>\n",
      "<frameset rows=\"280,*\" border=\"0\">\n",
      "<frame name=\"banner\" src=\"file://", f2, "\">\n",
      "<frame name=\"main\" scrolling=\"auto\">",
      "</frameset>", sep="",file=f1)

  ## create the image map
  href  =sample(c("www.bioconductor.org", "www.r-project.org"),nrow(coord),replace=TRUE)
  title =sample(as.character(packageDescription("geneplotter")),nrow(coord),replace=TRUE)
  con = file(f2, open="w")
  imageMap(coord, con,
    list(HREF=paste("http://", href, sep=""),
         TITLE=title, TARGET=rep("main", nrow(coord))), fpng)
  close(con)

  cat("Now have a look at file ", f1, " with your browser.\n", sep="")
}

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

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Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: XML
Now have a look at file /work/tmp/tmp/RtmpVGIBMg/file6898347abe94.html with your browser.