genomation: Summary, annotation and visualization of genomic data
Version 1.8.0

A package for summary and annotation of genomic intervals. Users can visualize and quantify genomic intervals over pre-defined functional regions, such as promoters, exons, introns, etc. The genomic intervals represent regions with a defined chromosome position, which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

Package details

AuthorAltuna Akalin [aut, cre], Vedran Franke [aut, cre], Katarzyna Wreczycka [aut], Alexander Gosdschan [ctb], Liz Ing-Simmons [ctb]
Bioconductor views Annotation CpGIsland Sequencing Visualization
MaintainerAltuna Akalin <[email protected]>, Vedran Franke <[email protected]>
LicenseArtistic-2.0
Version1.8.0
URL http://bioinformatics.mdc-berlin.de/genomation/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("genomation")

Try the genomation package in your browser

Any scripts or data that you put into this service are public.

genomation documentation built on May 31, 2017, 3:01 p.m.