getFlanks-methods: Function to get upstream and downstream adjecent regions to a...
In genomation: Summary, annotation and visualization of genomic data

Function to get upstream and downstream adjecent regions to a genomic feature such as CpG islands

getFlanks(grange,flank=2000,clean=TRUE)

## S4 method for signature 'GRanges'
getFlanks(grange, flank = 2000, clean = TRUE)

`grange`	GRanges object for the feature
`flank`	number of basepairs for the flanking regions
`clean`	If set to TRUE, flanks overlapping with other main features will be trimmed, and overlapping flanks will be removed. This will remove multiple counts when other features overlap with flanks

GRanges object for flanking regions

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data(cpgi)
cpgi.flanks = getFlanks(cpgi)
head(cpgi.flanks)

genomation documentation built on Nov. 8, 2020, 5:21 p.m.

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