gtrellis: Genome Level Trellis Layout

Share:

Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.

Author
Zuguang Gu
Date of publication
2016-4-26 00:00:00
Maintainer
Zuguang Gu <z.gu@dkfz.de>
License
GPL (>= 2)
Version
1.6.0
URLs

View on Bioconductor

Files in this package

gtrellis/DESCRIPTION
gtrellis/NAMESPACE
gtrellis/NEWS
gtrellis/R
gtrellis/R/custimized_track.R
gtrellis/R/global.R
gtrellis/R/layout.R
gtrellis/R/partition.R
gtrellis/R/track.R
gtrellis/TODO
gtrellis/build
gtrellis/build/vignette.rds
gtrellis/inst
gtrellis/inst/CITATION
gtrellis/inst/doc
gtrellis/inst/doc/gtrellis.R
gtrellis/inst/doc/gtrellis.Rmd
gtrellis/inst/doc/gtrellis.html
gtrellis/inst/extdata
gtrellis/inst/extdata/df_control.rds
gtrellis/inst/extdata/df_tumor.rds
gtrellis/inst/extdata/gencode_v19_protein_coding_genes.rds
gtrellis/inst/extdata/gwasCatalog.RData
gtrellis/inst/tests
gtrellis/man
gtrellis/man/add_heatmap_track.rd
gtrellis/man/add_ideogram_track.rd
gtrellis/man/add_lines_track.rd
gtrellis/man/add_points_track.rd
gtrellis/man/add_rect_track.rd
gtrellis/man/add_segments_track.rd
gtrellis/man/add_track.rd
gtrellis/man/current_track.rd
gtrellis/man/get_cell_meta_data.rd
gtrellis/man/gtrellis_layout.rd
gtrellis/man/gtrellis_show_index.rd
gtrellis/test
gtrellis/tests
gtrellis/tests/test-all.R
gtrellis/tests/testthat
gtrellis/tests/testthat/test_layout.R
gtrellis/vignettes
gtrellis/vignettes/custom.css
gtrellis/vignettes/gtrellis.Rmd