Description Usage Arguments Details Value Author(s) Examples
Get meta data in a cell
1 | get_cell_meta_data(name, category, track)
|
name |
name of the supported meta data, see 'details' section. |
category |
which category. By default it is the current category. |
track |
which track. By default it is the current track. |
Following meta data can be retrieved:
name
name of the category.
xlim
xlim without including padding. Cells in the same column share the same xlim
.
ylim
ylim without including padding.
extended_xlim
xlim with padding.
extended_ylim
ylim with padding.
original_xlim
xlim in original data.
original_ylim
ylim in original data.
column
which column in the layout.
row
which row in the layout.
track
which track in the layout.
The vignette has a graphical explanation of all these meta data.
Corresponding meta data that user queried.
Zuguang Gu <z.gu@dkfz.de>
1 2 | # There is no example
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Loading required package: grid
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colnames,
dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
========================================
gtrellis version 1.22.0
Bioconductor page: http://bioconductor.org/packages/gtrellis/
Github page: https://github.com/jokergoo/gtrellis
Documentation: http://bioconductor.org/packages/gtrellis/
If you use it in published research, please cite:
Gu, Z. gtrellis: an R/Bioconductor package for making genome-level
Trellis graphics. BMC Bioinformatics 2016.
This message can be suppressed by:
suppressPackageStartupMessages(library(gtrellis))
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