get_cell_meta_data: Get meta data in a cell

Description Usage Arguments Details Value Author(s) Examples

View source: R/track.R

Description

Get meta data in a cell

Usage

1

Arguments

name

name of the supported meta data, see 'details' section.

category

which category. By default it is the current category.

track

which track. By default it is the current track.

Details

Following meta data can be retrieved:

name

name of the category.

xlim

xlim without including padding. Cells in the same column share the same xlim.

ylim

ylim without including padding.

extended_xlim

xlim with padding.

extended_ylim

ylim with padding.

original_xlim

xlim in original data.

original_ylim

ylim in original data.

column

which column in the layout.

row

which row in the layout.

track

which track in the layout.

The vignette has a graphical explanation of all these meta data.

Value

Corresponding meta data that user queried.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

1
2
# There is no example
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Example output

Loading required package: grid
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package:BiocGenericsThe following objects are masked frompackage:parallel:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked frompackage:stats:

    IQR, mad, sd, var, xtabs

The following objects are masked frompackage:base:

    anyDuplicated, append, as.data.frame, basename, cbind, colnames,
    dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
    grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
    rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package:S4VectorsThe following object is masked frompackage:base:

    expand.grid

Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
========================================
gtrellis version 1.22.0
Bioconductor page: http://bioconductor.org/packages/gtrellis/
Github page: https://github.com/jokergoo/gtrellis
Documentation: http://bioconductor.org/packages/gtrellis/

If you use it in published research, please cite:
Gu, Z. gtrellis: an R/Bioconductor package for making genome-level 
  Trellis graphics. BMC Bioinformatics 2016.

This message can be suppressed by:
  suppressPackageStartupMessages(library(gtrellis))
========================================

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gtrellis documentation built on Nov. 8, 2020, 7:50 p.m.