sites.ctrl: Controls for Sample Retrovirus Integration Sites data
In hiAnnotator: Functions for annotating GRanges objects
Description
Controls for a sample dataset containing collection of unique HIV & MLV
integration sites in the human genome mapped to UCSC freeze hg18 from
PMID: 12805549. Each row represents three controls per integration site
in sites object.
Format
A data frame with 3909 rows and 6 variables
Details
Sequence. Name of the DNA sequence which was aligned to the host
genome. There should be three control sites per experimental site from the
"sites" dataset.
Position. The genomic coordinate of the integration site.
Chr. The chromosome of the integration site.
Ort. The orientation or strand of the integration site.
virus. Name of the virus used for the experiment and a given
sequencing clone.
type. Column denoting whether the data is control
hiAnnotator documentation built on Nov. 8, 2020, 7:27 p.m.
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Description
Controls for a sample dataset containing collection of unique HIV & MLV integration sites in the human genome mapped to UCSC freeze hg18 from PMID: 12805549. Each row represents three controls per integration site in sites object.
Format
A data frame with 3909 rows and 6 variables
Details
Sequence. Name of the DNA sequence which was aligned to the host genome. There should be three control sites per experimental site from the "sites" dataset.
Position. The genomic coordinate of the integration site.
Chr. The chromosome of the integration site.
Ort. The orientation or strand of the integration site.
virus. Name of the virus used for the experiment and a given sequencing clone.
type. Column denoting whether the data is control
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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